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Ruth Gates
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Gender: Female
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Publication
NSF Fastlane Narrative
Research Project
Poster
Presentation
Current and Pending Support
Internet Dissemination
- Gates R., X. Pochon. 2010. A new Symbiodinium clade (Dinophyceae) from soritid foraminifera in Hawai’i. Molecular Phylogenetics and Evolution 56(1): 492-497.. DOI:10.1016/j.ympev.2010.03.040 - Published
- Gates R., J.L. Padilla-Gamino, R.R. Bidigare, D.J. Barshis, A. Alamaru, L. Hedouin, X. Hernandez-Pech, F. Kandel, S. Leon Soon, M.S. Roth, L.J. Rodrigues, A.A. Grottoli, C. Portocarrero, S.A. Wagenhauser, F. Buttler. 2013. Are all eggs created equal? A case study from the Hawaiian reef building coral Montipora capitata.. Coral Reefs 32: 137-152.. DOI:10.1007/s00338-012-0957-1 - Published
- Toonen R., D. Wagner, R. Gates, X. Pochon, L. Irwin. 2011. Azooxanthellate? Most Hawaiian black corals contain Symbiodinium. Proceedings of the Royal Society B: Biological Sciences 278: 1323-1328.. DOI:10.1098/rspb.2010.1681 - Published
- Gates R., M. Stat. 2011. Clade D Symbiodinium in scleractinian corals: a “nugget” of hope, a selfish opportunist, an ominous sign, or all of the above?. Journal of Marine Biology 2011: Article ID: 730715.. DOI:10.1155/2011/730715 - Published
- Gates R., X. Pochon, M. Stat, M. Takabayashi, D. Logan, L. Chasqui, L. Jones. 2010. Comparison of endosymbiotic and free-living Symbiodinium (Dinophyceae) diversity in a Hawaiian reef environment. Journal of Phycology 46(1): 53-65.. DOI:10.1111/j.1529-8817.2009.00797.x - Published
- Gates R., E. Sogin, D.M. Yost, L.H. Wang, T.Y. Fan, C.S. Chen, R.W. Lee. Compositional diversity in skeletal architecture influences biological heterogeneity and Symbiodinium habitat in corals. Proceedings of the National Academy of Sciences - Submitted - Under Review
- Gates R., T. Krueger. 2012. Cultivating endosymbionts — Host environmental mimics support the survival of Symbiodinium C15 ex hospite. Journal of Experimental Biology and Ecology 413: 169-176.. DOI:10.1016/j.jembe.2011.12.002 - Published
- Gates R., L. Hedouin, M. Metian. 2011. Ecotoxicological approach for assessing the contamination of a Hawaiian coral reef ecosystem (Honolua Bay, Maui) by metals and a metalloid. Marine Environmental Research 71(3): 149-161.. DOI:10.1016/j.marenvres.2010.12.006 - Published
- Gates R., H. Putnam, M. Stat, X. Pochon. 2012. Endosymbiotic flexibility associates with environmental sensitivity in scleractinian corals. Proceedings of the Royal Society London Series B 279: 4352-4361.. DOI:10.1098/rspb.2012.1454 - Published
- Gates R., A.B. Mayfield, Y.Y. Hsiao, T.Y. Fan, and C.S. Chan. 2010. Evaluating the temporal stability of stress-activated protein kinase and cytoskeleton gene expression in the Pacific reef corals Pocillopora damicornis and Seriatopora hystrix.. Journal of Experimental Marine Biology and Ecology 395: 215-222.. DOI:10.1016/j.jembe.2010.09.007 - Published
- Gates R., M.P. Lesser, M. Stat. Evolutionary ecology of coral symbioses with dinoflagellates: are all coral-dinoflagellate symbioses created equal?. Trends in Microbiology - Submitted - Under Review
- Gates R., H.M. Putnam. Examining the synergistic impacts of ocean acidification and thermal stress on coastal reef organisms: experimental infrastructure and ecological context. Journal of Experimental Marine Biology and Ecology - Submitted - Under Review
- Gates R., J.L. Padilla-Gamiño, T.M. Weatherby, R.G. Waller. 2011. Formation and structural organization of the egg-sperm bundle of the scleractinian coral Montipora capitata. Coral Reefs 30(2): 371-380.. DOI:10.1007/s00338-010-0700-8 - Published
- Gates R., J.L. Padilla-Gamino, X. Pochon, C. Bird, G. Concepcion. From parent to gamete: Vertical transmission of Symbiodinium (Dinophyceae) in the scleractinian coral Montipora capitata. PLoS ONE - Accepted - Awaiting Publication
- Gates R., M. Takabayashi, L.M. Adams, X. Pochon. 2012. Genetic Diversity of Free-Living Symbiodinium in Surface Water and Sediment of Hawai‘i and Florida. Coral Reefs 31(1): 157-167.. DOI:10.1007/s00338-011-0832-5 - Published
- Gates R., E.C. Franklin, M. Stat, X. Pochon, H.M. Putnam. 2012. GeoSymbio: A hybrid, cloud-based web application of global geospatial bioinformatics and ecoinformatics for Symbiodinium-host symbioses. Molecular Ecology Resoources 12(2): 369-373.. DOI:10.1111/j.1755-0998.2011.03081.x - Published
- Gates R., X. Pochon, H.M. Putnam, F. Burki. 2012. Identifying and Characterizing Alternative Molecular Markers for the Symbiotic and Free-Living Dinoflagellate Genus Symbiodinium. PLoS ONE 7(1): Article ID: e29816.. DOI:10.1371/journal.pone.0029816 - Published
- Gates R., R.A. Briggs, J.L. Padilla-Gamino, R.R. Bidigare, K.C. Ruttenberg. Impact of Montipora capitata coral spawning events on Hawaiian coastal biogeochemistry. Limnology and Oceanography - Submitted - Under Review
- Gates R., R. Toonen, D.J. Barshis, C. Birkenland, J.H. Stillman. Local adaptation in coral resilience to climate change. Proceedings of the Royal Society London Series B - Submitted - Under Review
- Gates R., R. Toonen, M. Stat, A.C. Baker, D.G. Bourne, A.M.S. Correa, Z. Forsman, M.J. Huggett, X. Pochon, D. Skillings, C. Starger, M. vanOppen. 2012. Molecular delineation of species in the coral holobiont. Advances in Marine Biology 63: 1-66.. DOI:10.1016/B978-0-12-394282-1.00001-6 - Published
- Gates R., J. Leong, R. Toonen, C.E. Farrar, Z. Forsman. 2013. Observing the Coral Symbiome Using Laser Scanning Confocal Microscopy. Science 339: 518.. DOI:10.1126/science.339.6119.518 - Published
- Gates R., P.J. Edmunds, M. Adjeroud, M. Baskett, I.B. Baums, A. Budd, R.C. Carpenter, N. Fabina, T. Fan, E.C. Franklin, K. Gross, X. Han, et al. . Persistence of coral reefs through past and present climate change. Ecology Letters - Submitted - Under Review
- Gates R., M.P. Lesser, M. Slattery, M. Stat, M. Ojimi, A. Grottoli. 2010. Photoacclimatization by the coral Montastraea cavernosa in the mesophotic Zone: Light, food, and genetics. Ecology 91(4): 990-1003.. DOI:10.1890/09-0313.1 - Published
- Gates R., P.J. Edmunds and H.M. Putnam . Photophysiological consequences of vertical stratification of Symbiodinium in the tissues of Porites lutea. Biological Bulletin - Submitted - Under Review
- Toonen R., R. Gates, D.J. Barshis, J.H. Stillman, L.W. Smith, C. Birkeland. 2010. Protein expression and genetic structure of the coral Porites lobata in an environmentally extreme Samoan back reef: does host genotype limit phenotypic plasticity?. Molecular Ecology 19(8): 1705-1720.. DOI:10.1111/j.1365-294X.2010.04574.x - Published
- Gates R., E.C. Franklin, M. Stat, X. Pochon, H.M. Putnam. Proceedings Editors: M.B. Jones, C. Gries.. 2011. Rapid Development of a Hybrid Web Application for Synthesis Science of Symbiodinium with Google Apps. Proceedings of the Environmental Information Management Conference 2011 (EIM 2011): 44-48.. DOI:10.5060/D2NC5Z4X - Published
- Gates R., C.V. Palmer. 2010. Skeletal Eroding Band in Hawaiian Corals. Coral Reefs 29(2): 469-469.. DOI:10.1007/s00338-010-0597-2 - Published
- Gates R., J.L. Padilla-Gamino. 2012. Spawning dynamics in the Hawaiian reef-building coral Montipora capitata. Marine Ecology Progress Series 449: 145-160.. DOI:10.3354/meps09530 - Published
- Gates R., J.L. Salerno, D.R. Reineman, M.S. Rappe. 2011. The effect of a sub-lethal temperature elevation on the structure of bacterial communities associated with the Coral Porites compressa. Journal of Marine Biology 2011: Article ID: 969173, 9 pages... DOI:10.1155/2011/969173 - Published
- Gates R., G.E. Hofmann, J.P. Barry, P.J. Edmunds, D.A. Hutchins, T. Klinger and M.A. Sewell. 2010. The Effect of Ocean Acidification on Calcifying Organisms in Marine Ecosystems: An Organism-to-Ecosystem Perspective. Annual Reviews of Ecology, Evolution and Systematics 41: 127-147.. DOI:10.1146/annurev.ecolsys.110308.120227 - Published
- Gates R., D.H. Green, P.J. Edmunds, X. Pochon. 2010. The effects of substratum type on the growth, mortality, and photophysiology of juvenile corals in St. John, US Virgin Islands. Journal of Experimental Marine Biology and Ecology 384(1-2): 18-29.. DOI:10.1016/j.jembe.2009.12.008 - Published
- Gates R., T. D. Ainsworth, R. Vega Thurber. 2010. The Future of Coral Reefs - A Microbial Perspective. Trends in Ecology and Evolution 25(4): 233-240.. DOI:10.1016/j.tree.2009.11.001 - Published
- Gates R., T.D. Ainsworth. 2011. The nature and taxonomic composition of coral symbiomes as drivers of performance limits in scleractinian corals. Journal of Experimental Marine Biology and Ecology 408(1-2): 94-101.. DOI:10.1016/j.jembe.2011.07.029 - Published
- Gates R., H.M. Putnam, A.B. Mayfield, T.Y. Fan, C.S. Chan. The physiological and molecular responses of larvae from the reef-building coral Pocillopora damicornis exposed to near-future increases in temperature and pCO2. Marine Biology - Submitted - Under Review
- Gates R., N.S. Fabina, H.M. Putnam, M. Stat, E.C. Franklin. Transmission mode predicts specificity and interaction patterns in coral-Symbiodinium communities. PLoS ONE - Submitted - Under Review
- Gates R., R. Toonen, M. Takabayashi, M. Stat, C.E. Bird, X. Pochon, L. Chasqui, L.J. Chauka, G.T. Concepcion, D. Logan. 2011. Variation in Symbiodinium ITS2 sequence assemblages among coral colonies. Plos One 6(1): Article ID: e15854.. DOI:10.1371/journal.pone.0015854 - Published
NSF Fastlane Narrative
Research Project
- Algorithm development for metabolomic data analysis
- Coral Health around Hawai‘i Island Cross-Cutting Meta-analysis of Environmental, Ecological, and Genomic Data
- Molecular responses of coral reef ecosystems as an indicator of environmental stress
- Spawning dynamics in Montipora capitata: a functional genomics approach
- The molecular pathology of coral skeletal growth anomalies
Poster
Presentation
- Sogin E., R. Gates, Chen T, Wang LH, Fan TY, Chen CSC, Horgen D . 3/16/2012. A novel approach to investigating metabolite production in varying coral-Symbiodinium unions.
- Sogin E., R. Gates, Chen T, Wang LH, Fan TY, Chen CSC, Horgen D . 11/12/2011. Using Metabolomics Techniques to investigate implications of diversity in coral-Symbiodinium unions.
- Sogin E., R. Gates. 10/07/2011. Using Metabolomics to investigate implications of diversity in coral-Symbiodinium unions .
Current and Pending Support
Internet Dissemination


